46 lines
1.2 KiB
C
46 lines
1.2 KiB
C
#include "fmindex.h"
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#include <limits.h>
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#include <stdio.h>
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#include <string.h>
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int main() {
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char *s = "ALALA";
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char *pattern = "AL";
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printf("> Constructing FM-index...\n");
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fm_index *index = FMIndexConstruct(s);
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if (!index) {
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printf("Failed to allocate memory for index...\n");
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return 1;
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}
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printf("> FM-index constructed.\n");
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printf("BWT: \"%s\"\n", index->bwt);
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ranges_t start, end;
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FMIndexFindMatchRange(index, pattern, strlen(pattern), &start, &end);
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unsigned long match_count = end - start;
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unsigned long *match_indices = calloc(match_count, sizeof(unsigned long));
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FMIndexFindRangeIndices(index, start, end, &match_indices);
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printf("\nPattern \"%s\" occurs: %lu times\nIndices: ", pattern, match_count);
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for (unsigned long i = 0; i < match_count; ++i)
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printf("%lu ", match_indices[i]);
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printf("\n");
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if (match_count)
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printf("%s\n", s);
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for (unsigned long i = 0; i < index->bwt_sz - 1; ++i) {
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int found = 0;
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for (unsigned long j = 0; j < match_count; ++j)
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if (match_indices[j] == i)
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found = 1;
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printf("%c", (found) ? '^' : ' ');
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}
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printf("\n");
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free(match_indices);
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FMIndexFree(index);
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return 0;
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}
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